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Anthony Fodor, Ph.D.
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Anthony Fodor, Ph.D.

Bioinformatics Building 361
9201 University City Blvd
Charlotte, NC 28223

Email at uncc.edu: afodor
Phone: (704) 687-8214
Office Location: Bioinformatics 361

Biography:

Research Description

Anthony Fodor's lab is focused on understanding complex microbial communities.  With his collaborators, his lab has performed surveys on a diversity of metagenomes including the human and mouse gut microbiomes, a North Carolina wastewater treatment plant and a freshwater river system in California.  His long term interests include algorithm development and the functional genomics of ion channels and transporters.

Recent Publications:

Hamp TJ, Jones WJ, Fodor AA. The effects of experimental choices and analysis noise on surveys of the rare biosphere. Appl Environ Microbiol 2009.  Early access ahead of publication.

 

Sanapareddy N, Hamp TJ, Gonzalez LC, Hilger HA, Fodor AA, Clinton SM. Molecular diversity of a North Carolina wastewater treatment plant as revealed by pyrosequencing. Appl Environ Microbiol 2009,75:1688-1696.

 

Fodor AA and Aldrich RW.  Convergent Evolution of Alternative Splices at Domain Boundaries of the BK Channel.    Annual Review of Physiology.  Vol. 71: 19-36 (Volume publication date March 2009)

 

Reid RW, Fodor AA. Determining gene expression on a single pair of microarrays. BMC Bioinformatics 2008,9:489.

 

Gharaibeh RZ, Fodor AA, Gibas CJ. Background correction using dinucleotide affinities improves the performance of GCRMA. BMC Bioinformatics 2008,9:452.

 

Fodor AA, Tickle TL and Richardson C., Towards the uniform distribution of null p-values on Affymetrix microarrays.  Genome Biol. 2007; 8(5): R69

 

Gharaibeh RZ, Fodor AA, Gibas CJ.  Using probe secondary structure information to enhance Affymetrix GeneChip background estimates, Comput Biol Chem. 2007 Apr;31(2):92-8. Epub 2007 Feb 20.

 

Pyott SJ, Meredith AL, Fodor AA, Vázquez AE, Yamoah E.N., Aldrich R.W., Cochlear Function in Mice Lacking the BK Channel {alpha}, beta1, or beta4 Subunits, J. Biol. Chem., Vol. 282, Issue 5, 3312-3324, February 2, 2007

 

Meredith AL, Wiler SW, Miller BH, Takahashi JS, Fodor AA, Ruby NF, Aldrich RW, BK calcium-activated potassium channels regulate circadian behavioral rhythms and pacemaker output, Nature Neuroscience, 9, 1041-1049, 2006

 

Fodor A.A., Aldrich R.W. Statistical Limits to the Identification of Ion Channel Domains by Sequence Similarity. JGP 127(6), 755-766, 2006

 

Fodor A.A., Aldrich RW.  Influence of conservation on calculations of amino acid covariance in multiple sequence alignments.  Proteins: Structure, Function and Bioinformatics. 2004 Aug 1;56(2):211-21.

 

Dekker JP, Fodor A.A., Aldrich RW, Yellen G. A perturbation-based method for calculating explicit likelihood of evolutionary co-variance in multiple sequence alignments.  Bioinformatics. 2004 Jul 10;20(10):1565-72.

 

Fodor A.A., Aldrich RW.  On evolutionary conservation of thermodynamic coupling in proteins.  Journal of Biological Chemistry. 2004 Apr 30;279(18):19046-50.

 

 

Departments:

Department of Bioinformatics and Genomics